Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_102208 | Not Available | - | 855232 - 855447 | 8426.83 |
| lysyl-trna synthetase, class ii | SAMN04489864_102209 | Not Available | - | 855571 - 857280 | 64648.6 |
| long-chain acyl-coa synthetase | SAMN04489864_102210 | Not Available | - | 857382 - 859289 | 71567.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_102211 | Not Available | + | 859546 - 862743 | 118409.0 |
| starch-binding associating with outer membrane | SAMN04489864_102212 | Not Available | + | 862764 - 864251 | 56276.6 |
| phospholipase c | SAMN04489864_102213 | Not Available | + | 864272 - 866788 | 94633.9 |
| alkaline phosphatase | SAMN04489864_102214 | Not Available | - | 866759 - 868147 | 50616.0 |
| iron-sulfur cluster assembly protein | SAMN04489864_102215 | Not Available | - | 868277 - 868603 | 11814.9 |
| nitrogen fixation protein nifu | SAMN04489864_102216 | Not Available | - | 868640 - 869053 | 14868.7 |
| cysteine desulfurase iscs | SAMN04489864_102217 | Not Available | - | 869074 - 870285 | 44182.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.