Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_102198 | Not Available | - | 845870 - 846550 | 26114.1 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN04489864_102199 | Not Available | + | 846687 - 847343 | 24592.9 |
| ssra-binding protein | SAMN04489864_102200 | Not Available | - | 847348 - 847797 | 17388.3 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN04489864_102201 | Not Available | + | 847921 - 850203 | 85112.0 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN04489864_102202 | Not Available | - | 850209 - 850679 | 17974.1 |
| iron (metal) dependent repressor, dtxr family | SAMN04489864_102203 | Not Available | + | 850817 - 851467 | 24823.1 |
| manganese transport protein | SAMN04489864_102204 | Not Available | + | 851464 - 853329 | 68380.0 |
| uracil-dna glycosylase | SAMN04489864_102205 | Not Available | - | 853330 - 854010 | 25468.5 |
| thioredoxin | SAMN04489864_102206 | Not Available | - | 854015 - 854563 | 20420.8 |
| hypothetical protein | SAMN04489864_102207 | Not Available | + | 854660 - 855223 | 21837.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.