Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04489864_102178 | Not Available | - | 820822 - 821901 | 41044.0 |
| hypothetical protein | SAMN04489864_102179 | Not Available | - | 821911 - 824034 | 81146.4 |
| hypothetical protein | SAMN04489864_102180 | Not Available | - | 824036 - 824752 | 26641.3 |
| thif family protein | SAMN04489864_102181 | Not Available | - | 824739 - 827066 | 86866.3 |
| response regulator receiver domain-containing protein | SAMN04489864_102182 | Not Available | + | 827183 - 827638 | 17496.9 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04489864_102183 | Not Available | + | 827813 - 830473 | 97102.1 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04489864_102184 | Not Available | + | 830475 - 831482 | 37213.4 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN04489864_102185 | Not Available | - | 831494 - 832969 | 56741.2 |
| large conductance mechanosensitive channel | SAMN04489864_102186 | Not Available | + | 833131 - 833562 | 15342.3 |
| uncharacterized iron-regulated protein | SAMN04489864_102187 | Not Available | - | 833698 - 834684 | 37436.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.