Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| polyketide cyclase / dehydrase and lipid transport | SAMN04489864_102148 | Not Available | - | 792579 - 792977 | 14908.1 |
| orotate phosphoribosyltransferase | SAMN04489864_102149 | Not Available | - | 792980 - 793642 | 24205.9 |
| nudix domain-containing protein | SAMN04489864_102150 | Not Available | + | 793680 - 794252 | 22006.2 |
| phosphopantetheine adenylyltransferase | SAMN04489864_102151 | Not Available | - | 794258 - 794719 | 17217.0 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN04489864_102152 | Not Available | - | 794743 - 795285 | 20399.5 |
| protein of unknown function | SAMN04489864_102153 | Not Available | - | 795276 - 796106 | 31468.2 |
| exodeoxyribonuclease-5 | SAMN04489864_102154 | Not Available | + | 796160 - 797614 | 54885.8 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04489864_102155 | Not Available | - | 797619 - 798914 | 49366.2 |
| hypothetical protein | SAMN04489864_102156 | Not Available | - | 798987 - 799937 | 34872.6 |
| dipeptidyl-peptidase-4 | SAMN04489864_102157 | Not Available | - | 800065 - 802233 | 81043.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.