Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna processing protein | SAMN04489864_102118 | Not Available | + | 754879 - 755967 | 39808.8 |
| cystathionine beta-synthase | SAMN04489864_102119 | Not Available | + | 756100 - 757461 | 49861.8 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SAMN04489864_102120 | Not Available | - | 757466 - 758791 | 48178.0 |
| protein of unknown function | SAMN04489864_102121 | Not Available | - | 758827 - 759489 | 25735.6 |
| dna helicase-2 / atp-dependent dna helicase pcra | SAMN04489864_102122 | Not Available | - | 759679 - 761979 | 87062.8 |
| putative membrane protein | SAMN04489864_102123 | Not Available | - | 762050 - 763540 | 56844.8 |
| hypothetical protein | SAMN04489864_102124 | Not Available | - | 763540 - 764058 | 19462.1 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN04489864_102125 | Not Available | + | 764114 - 765484 | 50669.6 |
| lysozyme | SAMN04489864_102126 | Not Available | + | 765542 - 766372 | 32540.2 |
| hypothetical protein | SAMN04489864_102127 | Not Available | - | 766430 - 767026 | 21470.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.