Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase | SAMN04489864_10298 | Not Available | - | 732909 - 733754 | 31009.0 |
| nadh dehydrogenase | SAMN04489864_10299 | Not Available | - | 733751 - 735013 | 46623.9 |
| secd/secf fusion protein | SAMN04489864_102100 | Not Available | - | 735117 - 738074 | 106610.0 |
| dihydrofolate reductase | SAMN04489864_102101 | Not Available | - | 738207 - 738695 | 18260.9 |
| thymidylate synthase | SAMN04489864_102102 | Not Available | - | 738741 - 739679 | 35897.4 |
| hypothetical protein | SAMN04489864_102103 | Not Available | + | 739686 - 740273 | 22246.3 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN04489864_102104 | Not Available | + | 740276 - 741079 | 29902.3 |
| putative redox protein | SAMN04489864_102105 | Not Available | + | 741090 - 741512 | 15592.9 |
| o-succinylhomoserine sulfhydrylase | SAMN04489864_102106 | Not Available | + | 741514 - 742680 | 42855.2 |
| protein of unknown function (du1801) | SAMN04489864_102107 | Not Available | + | 742686 - 743108 | 15483.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.