Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_10248 | Not Available | - | 687288 - 687710 | 16007.4 |
| l-lysine 6-transaminase | SAMN04489864_10249 | Not Available | - | 687749 - 689080 | 50067.3 |
| cubico group peptidase, beta-lactamase class c family | SAMN04489864_10250 | Not Available | - | 689400 - 690536 | 42019.9 |
| hypothetical protein | SAMN04489864_10251 | Not Available | + | 690678 - 691004 | 12588.4 |
| 1-aminocyclopropane-1-carboxylate deaminase | SAMN04489864_10252 | Not Available | - | 690997 - 691866 | 32127.7 |
| hypothetical protein | SAMN04489864_10253 | Not Available | - | 691866 - 692903 | 37488.3 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04489864_10254 | Not Available | + | 693197 - 694231 | 39265.1 |
| branched-chain amino acid aminotransferase | SAMN04489864_10255 | Not Available | + | 694233 - 695078 | 31881.5 |
| methionyl-trna formyltransferase | SAMN04489864_10256 | Not Available | - | 695096 - 696010 | 33579.9 |
| dna topoisomerase-1 | SAMN04489864_10257 | Not Available | + | 696070 - 697119 | 40281.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.