Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyrimidine operon attenuation protein / uracil phosphoribosyltransferase | SAMN04489864_10218 | Not Available | - | 658208 - 658756 | 20894.2 |
| d-alanine transaminase | SAMN04489864_10219 | Not Available | - | 658820 - 659644 | 31043.3 |
| d-aminopeptidase | SAMN04489864_10220 | Not Available | - | 659634 - 660776 | 40369.8 |
| predicted thiol-disulfide oxidoreductase yuxk, dcc family | SAMN04489864_10221 | Not Available | + | 660899 - 661297 | 15371.7 |
| methyltransferase domain-containing protein | SAMN04489864_10222 | Not Available | - | 661299 - 661955 | 25339.4 |
| hypothetical protein | SAMN04489864_10223 | Not Available | - | 661952 - 662149 | 7532.68 |
| hexosaminidase | SAMN04489864_10224 | Not Available | - | 662155 - 663828 | 63955.8 |
| small subunit ribosomal protein s1 | SAMN04489864_10225 | Not Available | - | 664026 - 665960 | 71602.1 |
| sh3 domain-containing protein | SAMN04489864_10226 | Not Available | - | 666206 - 666919 | 26901.7 |
| protein of unknown function | SAMN04489864_10227 | Not Available | - | 667089 - 667928 | 31406.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.