Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl-coa mutase | SAMN04489864_1028 | Not Available | - | 642841 - 646206 | 125376.0 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN04489864_1029 | Not Available | - | 646287 - 647957 | 62115.9 |
| dihydrofolate synthase / folylpolyglutamate synthase | SAMN04489864_10210 | Not Available | - | 648017 - 649303 | 47241.6 |
| hypothetical protein | SAMN04489864_10211 | Not Available | - | 649322 - 650134 | 28666.8 |
| biopolymer transport protein exbd | SAMN04489864_10212 | Not Available | - | 650134 - 650535 | 14892.5 |
| outer membrane transport energization protein exbb | SAMN04489864_10213 | Not Available | - | 650535 - 651245 | 25726.4 |
| hypothetical protein | SAMN04489864_10214 | Not Available | - | 651247 - 652317 | 39896.6 |
| tonb dependent receptor | SAMN04489864_10215 | Not Available | - | 652374 - 654077 | 63463.4 |
| tetratricopeptide repeat-containing protein | SAMN04489864_10216 | Not Available | - | 654087 - 657104 | 115155.0 |
| aspartate carbamoyltransferase | SAMN04489864_10217 | Not Available | - | 657272 - 658204 | 34109.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.