Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-protein phosphatase ywqe | SAMN04489864_101550 | Not Available | + | 607040 - 607774 | 27897.7 |
| putative abc transport system permease protein | SAMN04489864_101551 | Not Available | - | 607787 - 609019 | 43657.9 |
| iron-sulfur cluster assembly protein | SAMN04489864_101552 | Not Available | - | 609150 - 609503 | 12689.0 |
| hypothetical protein | SAMN04489864_101553 | Not Available | + | 609597 - 610127 | 20210.1 |
| methylmalonyl-coa mutase | SAMN04489864_101554 | Not Available | + | 610159 - 611697 | 56613.7 |
| chromosomal replication initiator protein dnaa | SAMN04489864_101555 | Not Available | + | 611891 - 613321 | 53899.1 |
| nudix domain-containing protein | SAMN04489864_101556 | Not Available | - | 613318 - 613866 | 20558.6 |
| hypothetical protein | SAMN04489864_101557 | Not Available | - | 613921 - 614307 | 14816.0 |
| uncharacterized protein | SAMN04489864_101558 | Not Available | - | 614313 - 615101 | 26916.6 |
| tlp18.3, psb32 and molo-1 founding protein of phosphatase | SAMN04489864_101559 | Not Available | - | 615104 - 615547 | 16378.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.