Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dolichyl-phosphate-mannose-protein mannosyltransferase | SAMN04489864_101500 | Not Available | - | 547121 - 548620 | 58129.1 |
| methane oxygenase pmoa | SAMN04489864_101501 | Not Available | - | 548626 - 549657 | 38617.9 |
| hexosaminidase | SAMN04489864_101502 | Not Available | - | 549706 - 551679 | 74610.9 |
| protein n-acetyltransferase, rimj/riml family | SAMN04489864_101503 | Not Available | - | 551734 - 552243 | 19305.0 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN04489864_101504 | Not Available | - | 552253 - 553662 | 50930.9 |
| aspartate-semialdehyde dehydrogenase | SAMN04489864_101505 | Not Available | - | 553778 - 554770 | 36632.6 |
| lamin tail domain | SAMN04489864_101506 | Not Available | + | 554821 - 557427 | 96321.2 |
| ytxh-like protein | SAMN04489864_101507 | Not Available | + | 557498 - 557857 | 13054.8 |
| sugar phosphate isomerase/epimerase | SAMN04489864_101508 | Not Available | - | 557870 - 558739 | 32224.5 |
| nucleoside transporter | SAMN04489864_101509 | Not Available | - | 558782 - 560014 | 45524.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.