Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04489864_11537 | Not Available | + | 4283999 - 4285231 | 48524.0 |
| uncharacterized membrane protein yhhn | SAMN04489864_11538 | Not Available | + | 4285206 - 4285910 | 26737.5 |
| hypothetical protein | SAMN04489864_11539 | Not Available | - | 4285915 - 4286319 | 14871.2 |
| dna topoisomerase i | SAMN04489864_11540 | Not Available | - | 4286333 - 4288885 | 95735.0 |
| glutathione peroxidase | SAMN04489864_11541 | Not Available | + | 4289125 - 4289643 | 19551.7 |
| hypothetical protein | SAMN04489864_11542 | Not Available | + | 4289708 - 4290475 | 29048.4 |
| dna polymerase-4 | SAMN04489864_11543 | Not Available | + | 4290581 - 4291747 | 43639.9 |
| dna polymerase iii, alpha subunit | SAMN04489864_11544 | Not Available | + | 4291754 - 4294747 | 114293.0 |
| dna gyrase subunit a | SAMN04489864_11545 | Not Available | + | 4294927 - 4297476 | 95021.9 |
| tetratricopeptide repeat-containing protein | SAMN04489864_11546 | Not Available | + | 4297508 - 4298644 | 41923.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.