Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, lytr/algr family | SAMN04489864_11354 | Not Available | + | 4071833 - 4072540 | 27453.7 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04489864_11355 | Not Available | - | 4072558 - 4073988 | 52179.1 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04489864_11356 | Not Available | - | 4073972 - 4077148 | 114667.0 |
| membrane fusion protein, multidrug efflux system | SAMN04489864_11357 | Not Available | - | 4077158 - 4078354 | 42751.4 |
| dna-binding transcriptional regulator, acrr family | SAMN04489864_11358 | Not Available | - | 4078362 - 4078946 | 22883.9 |
| uncharacterized protein | SAMN04489864_11359 | Not Available | - | 4079026 - 4079961 | 33934.8 |
| uncharacterized conserved protein, duf2147 family | SAMN04489864_11360 | Not Available | - | 4080081 - 4080515 | 16222.6 |
| hypothetical protein | SAMN04489864_11361 | Not Available | - | 4080591 - 4080824 | 8675.4 |
| dinb superfamily protein | SAMN04489864_11362 | Not Available | - | 4080858 - 4081370 | 19733.7 |
| hypothetical protein | SAMN04489864_11363 | Not Available | - | 4081372 - 4081866 | 19067.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.