Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c peroxidase | SAMN04489864_11323 | Not Available | + | 4042213 - 4043259 | 39327.1 |
| hypothetical protein | SAMN04489864_11324 | Not Available | + | 4043261 - 4044178 | 33591.2 |
| protein sco1/2 | SAMN04489864_11325 | Not Available | + | 4044249 - 4044887 | 24415.4 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN04489864_11326 | Not Available | + | 4044871 - 4045308 | 16015.3 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04489864_11328 | Not Available | + | 4045897 - 4047288 | 51983.3 |
| 23s rrna pseudouridine955/2504/2580 synthase | SAMN04489864_11329 | Not Available | + | 4047362 - 4048084 | 27722.5 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN04489864_11330 | Not Available | - | 4048081 - 4048770 | 25927.7 |
| peroxiredoxin | SAMN04489864_11331 | Not Available | - | 4048873 - 4049982 | 41239.8 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | SAMN04489864_11332 | Not Available | - | 4049986 - 4051431 | 53242.8 |
| hypothetical protein | SAMN04489864_11333 | Not Available | + | 4051571 - 4052011 | 17294.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.