Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04489864_11296 | Not Available | - | 4004052 - 4005080 | 38487.2 |
| pas domain s-box-containing protein | SAMN04489864_11297 | Not Available | - | 4005092 - 4006294 | 45688.8 |
| hypothetical protein | SAMN04489864_11298 | Not Available | - | 4006321 - 4008099 | 67244.8 |
| l,d-transpeptidase catalytic domain | SAMN04489864_11299 | Not Available | + | 4008278 - 4009771 | 57307.3 |
| nucleotide-binding universal stress protein, uspa family | SAMN04489864_112100 | Not Available | + | 4009776 - 4010645 | 32396.3 |
| hypothetical protein | SAMN04489864_112101 | Not Available | + | 4010649 - 4011416 | 29494.7 |
| cubico group peptidase, beta-lactamase class c family | SAMN04489864_112102 | Not Available | + | 4011590 - 4012669 | 41610.7 |
| dna-binding response regulator, lytr/algr family | SAMN04489864_112103 | Not Available | - | 4012711 - 4013415 | 27193.2 |
| histidine kinase | SAMN04489864_112104 | Not Available | - | 4013412 - 4014536 | 43967.5 |
| n-terminal domain of peptidase_s41 | SAMN04489864_112105 | Not Available | + | 4014742 - 4015992 | 47123.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.