Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04489864_11265 | Not Available | - | 3976409 - 3977728 | 50018.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04489864_11266 | Not Available | - | 3977731 - 3978405 | 25940.2 |
| hypothetical protein | SAMN04489864_11267 | Not Available | - | 3978413 - 3979237 | 30747.5 |
| hypothetical protein | SAMN04489864_11268 | Not Available | - | 3979241 - 3979525 | 11100.1 |
| protein of unknown function | SAMN04489864_11269 | Not Available | + | 3979695 - 3980492 | 27315.1 |
| hypothetical protein | SAMN04489864_11270 | Not Available | + | 3980571 - 3981107 | 19737.6 |
| ornithine--oxo-acid transaminase | SAMN04489864_11271 | Not Available | - | 3981144 - 3982403 | 46009.3 |
| lrp/asnc family transcriptional regulator, regulator for asna, asnc and gida | SAMN04489864_11272 | Not Available | + | 3982524 - 3982976 | 17141.9 |
| hydroxymethylpyrimidine synthase | SAMN04489864_11274 | Not Available | + | 3983459 - 3985333 | 69711.3 |
| thiamine-phosphate pyrophosphorylase | SAMN04489864_11275 | Not Available | + | 3985406 - 3985933 | 19873.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.