Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_11235 | Not Available | - | 3933846 - 3933941 | 3693.45 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase | SAMN04489864_11236 | Not Available | + | 3934039 - 3934482 | 16427.2 |
| 3-oxoacyl-(acyl-carrier-protein) synthase | SAMN04489864_11237 | Not Available | + | 3934488 - 3935759 | 44845.7 |
| acyl carrier protein | SAMN04489864_11238 | Not Available | + | 3935759 - 3936019 | 9957.04 |
| 4'-phosphopantetheinyl transferase superfamily protein | SAMN04489864_11239 | Not Available | + | 3936016 - 3936483 | 17772.1 |
| cold shock protein (beta-ribbon, cspa family) | SAMN04489864_11240 | Not Available | - | 3936544 - 3936735 | 6971.23 |
| hypothetical protein | SAMN04489864_11241 | Not Available | - | 3936795 - 3937064 | 9904.9 |
| tetratricopeptide repeat-containing protein | SAMN04489864_11242 | Not Available | + | 3937230 - 3938873 | 63737.4 |
| arac-type dna-binding protein | SAMN04489864_11243 | Not Available | + | 3939067 - 3939999 | 35518.3 |
| peroxiredoxin | SAMN04489864_11244 | Not Available | - | 3940071 - 3941426 | 51367.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.