Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pectinesterase | SAMN04489864_11225 | Not Available | - | 3921472 - 3922419 | 35396.9 |
| pectinesterase | SAMN04489864_11226 | Not Available | - | 3922452 - 3923414 | 35924.5 |
| lysophospholipase l1 | SAMN04489864_11227 | Not Available | - | 3923417 - 3924181 | 28739.9 |
| lysophospholipase l1 | SAMN04489864_11228 | Not Available | - | 3924178 - 3924909 | 27348.0 |
| fibronectin type iii domain-containing protein | SAMN04489864_11229 | Not Available | - | 3924900 - 3926462 | 55524.1 |
| starch-binding associating with outer membrane | SAMN04489864_11230 | Not Available | - | 3926473 - 3928269 | 66701.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_11231 | Not Available | - | 3928293 - 3931484 | 116785.0 |
| transcriptional regulator, laci family | SAMN04489864_11232 | Not Available | + | 3931671 - 3932681 | 37273.5 |
| protein of unknown function | SAMN04489864_11233 | Not Available | - | 3932697 - 3933083 | 14050.8 |
| chey chemotaxis protein or a chey-like rec (receiver) domain | SAMN04489864_11234 | Not Available | - | 3933306 - 3933695 | 14729.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.