Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxygluconokinase | SAMN04489864_11215 | Not Available | - | 3907275 - 3908291 | 37557.8 |
| d-glucuronate isomerase | SAMN04489864_11216 | Not Available | - | 3908293 - 3909693 | 53846.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04489864_11217 | Not Available | - | 3909746 - 3910561 | 28644.7 |
| 4-deoxy-l-threo-5-hexulose uronate isomerase | SAMN04489864_11218 | Not Available | - | 3910561 - 3911391 | 31298.0 |
| altronate hydrolase | SAMN04489864_11219 | Not Available | - | 3911402 - 3913045 | 58952.3 |
| tagaturonate reductase | SAMN04489864_11220 | Not Available | - | 3913048 - 3914553 | 55739.7 |
| pectate lyase, pela/pel-15e family | SAMN04489864_11221 | Not Available | - | 3914698 - 3915735 | 39109.4 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN04489864_11222 | Not Available | - | 3915940 - 3917871 | 72105.1 |
| polygalacturonase | SAMN04489864_11223 | Not Available | - | 3917882 - 3919555 | 61068.5 |
| beta-xylosidase | SAMN04489864_11224 | Not Available | - | 3919653 - 3921260 | 59797.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.