Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr protein | SAMN04489864_1125 | Not Available | - | 3896694 - 3897830 | 42284.1 |
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04489864_1126 | Not Available | - | 3897954 - 3898532 | 22929.0 |
| transcriptional regulator, contains xre-family hth domain | SAMN04489864_1127 | Not Available | + | 3898703 - 3899167 | 16819.8 |
| myo-inositol-1(or 4)-monophosphatase | SAMN04489864_1128 | Not Available | - | 3899164 - 3899955 | 29444.2 |
| prolipoprotein diacylglyceryl transferase | SAMN04489864_1129 | Not Available | - | 3899961 - 3901115 | 42724.0 |
| threonylcarbamoyladenosine trna methylthiotransferase mtab | SAMN04489864_11210 | Not Available | - | 3901157 - 3902476 | 49450.4 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | SAMN04489864_11211 | Not Available | - | 3902507 - 3903097 | 21700.5 |
| acyl-coa reductase | SAMN04489864_11212 | Not Available | - | 3903375 - 3905000 | 60014.5 |
| mfs transporter, acs family, hexuronate transporter | SAMN04489864_11213 | Not Available | - | 3905004 - 3906578 | 57977.8 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN04489864_11214 | Not Available | - | 3906608 - 3907282 | 24531.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.