Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dehydrogenase (flavoprotein) | SAMN04489864_11170 | Not Available | - | 3833494 - 3834642 | 43060.6 |
| nad(p)h-hydrate epimerase | SAMN04489864_11171 | Not Available | + | 3834682 - 3836163 | 52671.5 |
| anti-sigma-k factor rska | SAMN04489864_11172 | Not Available | - | 3836160 - 3836963 | 29373.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_11173 | Not Available | - | 3836965 - 3837441 | 18228.1 |
| lipoic acid synthetase | SAMN04489864_11174 | Not Available | - | 3837561 - 3838442 | 32948.8 |
| uncharacterized osmc-related protein | SAMN04489864_11175 | Not Available | + | 3838513 - 3838920 | 14661.5 |
| bacillithiol system protein ytxj | SAMN04489864_11176 | Not Available | - | 3839040 - 3839372 | 12782.3 |
| hypothetical protein | SAMN04489864_11177 | Not Available | - | 3839374 - 3839496 | 4388.61 |
| 6,7-dimethyl-8-ribityllumazine synthase | SAMN04489864_11178 | Not Available | - | 3839560 - 3840051 | 17296.7 |
| tetratricopeptide repeat-containing protein | SAMN04489864_11179 | Not Available | - | 3840140 - 3840805 | 23988.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.