Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cubico group peptidase, beta-lactamase class c family | SAMN04489864_11140 | Not Available | - | 3797083 - 3798909 | 67768.2 |
| hypothetical protein | SAMN04489864_11141 | Not Available | - | 3798896 - 3800527 | 60838.9 |
| dna mismatch repair protein mutl | SAMN04489864_11142 | Not Available | + | 3800693 - 3802546 | 69115.6 |
| rhomboid-like protein | SAMN04489864_11143 | Not Available | + | 3803114 - 3803809 | 26317.6 |
| membrane associated serine protease, rhomboid family | SAMN04489864_11144 | Not Available | + | 3803802 - 3804644 | 31285.0 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04489864_11145 | Not Available | + | 3804644 - 3805753 | 42421.3 |
| cysteinyl-trna synthetase | SAMN04489864_11146 | Not Available | + | 3805787 - 3807247 | 55152.8 |
| peptidase family m28 | SAMN04489864_11147 | Not Available | + | 3807264 - 3808253 | 37171.9 |
| hypothetical protein | SAMN04489864_11148 | Not Available | + | 3808297 - 3809151 | 31964.8 |
| glycerophosphoryl diester phosphodiesterase | SAMN04489864_11149 | Not Available | + | 3809156 - 3810037 | 33278.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.