Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1,4-alpha-glucan branching enzyme | SAMN04489864_11130 | Not Available | + | 3787252 - 3789150 | 70973.7 |
| alpha-l-fucosidase | SAMN04489864_11131 | Not Available | + | 3789212 - 3790540 | 50789.5 |
| carboxypeptidase c (cathepsin a) | SAMN04489864_11132 | Not Available | + | 3790620 - 3792185 | 58600.7 |
| hypothetical protein | SAMN04489864_11133 | Not Available | + | 3792213 - 3792386 | 6279.16 |
| spfh domain / band 7 family protein | SAMN04489864_11134 | Not Available | + | 3792388 - 3793233 | 31951.4 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | SAMN04489864_11135 | Not Available | + | 3793282 - 3794247 | 35925.6 |
| peptide-methionine (s)-s-oxide reductase | SAMN04489864_11136 | Not Available | - | 3794244 - 3794843 | 22862.4 |
| isopenicillin n synthase | SAMN04489864_11137 | Not Available | + | 3794985 - 3795947 | 36125.8 |
| phosphonoacetate hydrolase | SAMN04489864_11138 | Not Available | - | 3795962 - 3796183 | 8144.18 |
| hypothetical protein | SAMN04489864_11139 | Not Available | + | 3796328 - 3797086 | 27869.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.