Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_11120 | Not Available | + | 3777152 - 3779599 | 90852.6 |
| dna-binding transcriptional regulator, marr family | SAMN04489864_11121 | Not Available | + | 3779639 - 3780136 | 18862.2 |
| response regulator receiver domain-containing protein | SAMN04489864_11122 | Not Available | - | 3780133 - 3780486 | 13576.3 |
| hypothetical protein | SAMN04489864_11123 | Not Available | - | 3780492 - 3780677 | 6788.57 |
| hypothetical protein | SAMN04489864_11124 | Not Available | - | 3780689 - 3781582 | 31607.2 |
| d-xylose isomerase | SAMN04489864_11125 | Not Available | - | 3781634 - 3782944 | 49202.7 |
| xylulokinase | SAMN04489864_11126 | Not Available | - | 3782966 - 3784450 | 53832.5 |
| transcriptional regulator, laci family | SAMN04489864_11127 | Not Available | + | 3784570 - 3785616 | 38834.7 |
| response regulator receiver domain-containing protein | SAMN04489864_11128 | Not Available | - | 3785605 - 3785967 | 13246.9 |
| linoleoyl-coa desaturase | SAMN04489864_11129 | Not Available | - | 3786043 - 3787134 | 41618.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.