Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-rhamnosidase | SAMN04489864_11110 | Not Available | + | 3759191 - 3761509 | 87965.0 |
| alpha-l-rhamnosidase | SAMN04489864_11111 | Not Available | + | 3761506 - 3764181 | 100895.0 |
| sugar phosphate isomerase/epimerase | SAMN04489864_11112 | Not Available | + | 3764216 - 3765031 | 31135.0 |
| protein of unknown function | SAMN04489864_11113 | Not Available | + | 3765130 - 3766458 | 50245.1 |
| pas domain s-box-containing protein | SAMN04489864_11114 | Not Available | + | 3766519 - 3768678 | 81559.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_11115 | Not Available | + | 3768773 - 3769396 | 24095.6 |
| fecr protein | SAMN04489864_11116 | Not Available | + | 3769465 - 3770490 | 39164.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_11117 | Not Available | + | 3770493 - 3773129 | 99951.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_11118 | Not Available | + | 3773154 - 3775619 | 91625.9 |
| hypothetical chaperone protein | SAMN04489864_11119 | Not Available | + | 3775731 - 3777002 | 47651.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.