Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| predicted membrane protein | SAMN04489864_110106 | Not Available | - | 3687736 - 3688773 | 40367.6 |
| transporter, cpa2 family | SAMN04489864_110107 | Not Available | - | 3688901 - 3691114 | 81259.6 |
| riboflavin kinase / fmn adenylyltransferase | SAMN04489864_110108 | Not Available | - | 3691166 - 3692113 | 35559.0 |
| uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domains | SAMN04489864_110109 | Not Available | - | 3692120 - 3692980 | 31393.1 |
| trna pseudouridine synthase b | SAMN04489864_110110 | Not Available | - | 3692977 - 3693687 | 26631.2 |
| undecaprenyl-diphosphatase | SAMN04489864_110111 | Not Available | - | 3693850 - 3694644 | 28975.3 |
| protein of unknown function | SAMN04489864_110112 | Not Available | - | 3694651 - 3694878 | 8469.76 |
| cell division transport system permease protein | SAMN04489864_110113 | Not Available | - | 3694878 - 3695756 | 32754.0 |
| leucyl-trna synthetase | SAMN04489864_110114 | Not Available | + | 3696054 - 3698852 | 107089.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_110115 | Not Available | + | 3698918 - 3699421 | 19433.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.