Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase, sigma subunit, ecf family | SAMN04489864_11096 | Not Available | - | 3675226 - 3675813 | 22770.7 |
| excinuclease abc subunit a | SAMN04489864_11097 | Not Available | + | 3676072 - 3678873 | 103943.0 |
| lyse type translocator | SAMN04489864_11098 | Not Available | + | 3678888 - 3679544 | 24942.2 |
| hypothetical protein | SAMN04489864_11099 | Not Available | - | 3679610 - 3680491 | 31198.2 |
| ompa family protein | SAMN04489864_110100 | Not Available | - | 3680509 - 3682230 | 64148.5 |
| two-component system, lytt family, response regulator | SAMN04489864_110101 | Not Available | + | 3682450 - 3683001 | 20676.3 |
| thiol-disulfide isomerase or thioredoxin | SAMN04489864_110102 | Not Available | + | 3683119 - 3684531 | 54236.2 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN04489864_110103 | Not Available | + | 3684533 - 3686347 | 69789.5 |
| two component transcriptional regulator, lyttr family | SAMN04489864_110104 | Not Available | + | 3686349 - 3687092 | 28167.3 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN04489864_110105 | Not Available | - | 3687129 - 3687731 | 23061.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.