Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| predicted heme/steroid binding protein | SAMN04489864_109180 | Not Available | + | 3543707 - 3543946 | 9190.91 |
| hypothetical protein | SAMN04489864_109181 | Not Available | - | 3543921 - 3544379 | 17152.7 |
| helix-turn-helix domain-containing protein | SAMN04489864_109182 | Not Available | - | 3544488 - 3545306 | 31225.8 |
| predicted zn-dependent protease or its inactivated homolog | SAMN04489864_109183 | Not Available | - | 3545376 - 3546713 | 48471.6 |
| tldd protein | SAMN04489864_109184 | Not Available | - | 3546722 - 3548359 | 60082.2 |
| sugar or nucleoside kinase, ribokinase family | SAMN04489864_109185 | Not Available | - | 3548594 - 3549517 | 34037.1 |
| Trna-asn | Not Available | Not Available | + | 3549661 - 3549737 | Not Available |
| integrase core domain-containing protein | SAMN04489864_109187 | Not Available | + | 3550010 - 3551554 | 59389.5 |
| dna replication protein dnac | SAMN04489864_109188 | Not Available | + | 3551574 - 3552320 | 28472.3 |
| Trna-ile | Not Available | Not Available | + | 3554851 - 3554928 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.