Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cubico group peptidase, beta-lactamase class c family | SAMN04489864_109170 | Not Available | + | 3531359 - 3532453 | 41971.7 |
| predicted arabinose efflux permease, mfs family | SAMN04489864_109171 | Not Available | + | 3532458 - 3533627 | 41703.4 |
| multidrug efflux pump subunit acrb | SAMN04489864_109172 | Not Available | - | 3533663 - 3537064 | 125264.0 |
| rnd family efflux transporter, mfp subunit | SAMN04489864_109173 | Not Available | - | 3537083 - 3538168 | 39567.7 |
| outer membrane protein tolc | SAMN04489864_109174 | Not Available | - | 3538189 - 3539595 | 52248.6 |
| dna-binding transcriptional regulator, acrr family | SAMN04489864_109175 | Not Available | - | 3539600 - 3540145 | 20881.3 |
| uncharacterized membrane protein | SAMN04489864_109176 | Not Available | + | 3540548 - 3541120 | 21349.6 |
| udp-n-acetylmuramate dehydrogenase | SAMN04489864_109177 | Not Available | + | 3541169 - 3542185 | 36875.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_109178 | Not Available | + | 3542342 - 3542869 | 20330.3 |
| hypothetical protein | SAMN04489864_109179 | Not Available | + | 3543030 - 3543707 | 26545.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.