Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_109140 | Not Available | - | 3495101 - 3496720 | 60495.4 |
| 2-oxoglutarate dehydrogenase e2 component | SAMN04489864_109141 | Not Available | - | 3496856 - 3498067 | 42917.9 |
| 2-oxoglutarate dehydrogenase e1 component | SAMN04489864_109142 | Not Available | - | 3498090 - 3500885 | 104908.0 |
| deoxyribodipyrimidine photo-lyase | SAMN04489864_109143 | Not Available | - | 3500984 - 3502330 | 50968.2 |
| hypothetical protein | SAMN04489864_109144 | Not Available | + | 3502420 - 3503334 | 33021.6 |
| abortive infection bacteriophage resistance protein | SAMN04489864_109145 | Not Available | - | 3503366 - 3504274 | 35555.1 |
| transcriptional regulator, y4mf family | SAMN04489864_109146 | Not Available | + | 3504662 - 3504865 | 7705.47 |
| hypothetical protein | SAMN04489864_109147 | Not Available | + | 3504937 - 3505188 | 9843.86 |
| hypothetical protein | SAMN04489864_109148 | Not Available | + | 3506075 - 3506641 | 21455.0 |
| nucleotidyl transferase abieii toxin, type iv ta system | SAMN04489864_109149 | Not Available | + | 3506662 - 3507636 | 36981.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.