Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ix secretion system membrane protein, porp/sprf family | SAMN04489864_109120 | Not Available | - | 3471337 - 3472311 | 36172.6 |
| conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing protein | SAMN04489864_109121 | Not Available | - | 3472323 - 3473270 | 34618.6 |
| hypothetical protein | SAMN04489864_109122 | Not Available | - | 3473286 - 3474056 | 25902.8 |
| hypothetical protein | SAMN04489864_109123 | Not Available | - | 3474094 - 3476061 | 68451.1 |
| atp-dependent dna helicase recg | SAMN04489864_109124 | Not Available | + | 3476455 - 3477945 | 56497.3 |
| hypothetical protein | SAMN04489864_109125 | Not Available | - | 3478544 - 3479398 | 31798.0 |
| outer membrane protein tolc | SAMN04489864_109126 | Not Available | - | 3479417 - 3480733 | 48576.4 |
| multidrug efflux pump | SAMN04489864_109127 | Not Available | - | 3480880 - 3483984 | 113717.0 |
| membrane fusion protein, multidrug efflux system | SAMN04489864_109128 | Not Available | - | 3483989 - 3485086 | 38612.9 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN04489864_109129 | Not Available | + | 3485223 - 3487055 | 67234.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.