Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system permease protein | SAMN04489864_10990 | Not Available | + | 3432052 - 3433236 | 44461.0 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04489864_10991 | Not Available | + | 3433257 - 3434633 | 51155.2 |
| hamp domain-containing protein | SAMN04489864_10992 | Not Available | + | 3434647 - 3435861 | 46023.6 |
| pas domain s-box-containing protein | SAMN04489864_10993 | Not Available | - | 3435842 - 3437392 | 58490.1 |
| fr47-like protein | SAMN04489864_10994 | Not Available | + | 3437494 - 3438189 | 26345.6 |
| dna-binding transcriptional regulator, acrr family | SAMN04489864_10995 | Not Available | + | 3438314 - 3438913 | 22189.9 |
| acyl-coa thioester hydrolase | SAMN04489864_10996 | Not Available | + | 3438940 - 3439434 | 19053.8 |
| iron-binding zinc finger cdgsh type | SAMN04489864_10997 | Not Available | + | 3439511 - 3439735 | 8018.47 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN04489864_10998 | Not Available | - | 3439739 - 3441835 | 76509.7 |
| starch-binding associating with outer membrane | SAMN04489864_10999 | Not Available | - | 3441917 - 3443365 | 52356.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.