Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-n-arabinofuranosidase | SAMN04489864_10980 | Not Available | - | 3415587 - 3417128 | 57584.7 |
| rhamnogalacturonyl hydrolase yesr | SAMN04489864_10981 | Not Available | - | 3417131 - 3418237 | 42471.8 |
| glycosyl hydrolases family 43 | SAMN04489864_10982 | Not Available | - | 3418237 - 3420186 | 73054.0 |
| carbohydrate binding domain-containing protein | SAMN04489864_10983 | Not Available | - | 3420189 - 3422783 | 97090.0 |
| two component regulator propeller | SAMN04489864_10984 | Not Available | - | 3422893 - 3426993 | 155055.0 |
| hypothetical protein | SAMN04489864_10985 | Not Available | + | 3427310 - 3427414 | 4018.86 |
| hlyd family secretion protein | SAMN04489864_10986 | Not Available | + | 3427398 - 3428645 | 46032.7 |
| outer membrane protein tolc | SAMN04489864_10987 | Not Available | + | 3428650 - 3430110 | 55151.1 |
| putative abc transport system atp-binding protein | SAMN04489864_10988 | Not Available | + | 3430122 - 3430787 | 24597.8 |
| putative abc transport system permease protein | SAMN04489864_10989 | Not Available | + | 3430796 - 3432034 | 46845.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.