Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_10970 | Not Available | + | 3399485 - 3400120 | 23633.3 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04489864_10971 | Not Available | - | 3400136 - 3400642 | 19380.1 |
| hypothetical protein | SAMN04489864_10972 | Not Available | + | 3400850 - 3401191 | 12282.4 |
| protein of unknown function | SAMN04489864_10973 | Not Available | + | 3401230 - 3402471 | 45941.3 |
| alpha-l-arabinofuranosidase | SAMN04489864_10974 | Not Available | + | 3402789 - 3404768 | 73927.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_10975 | Not Available | + | 3405010 - 3408279 | 121930.0 |
| starch-binding associating with outer membrane | SAMN04489864_10976 | Not Available | + | 3408290 - 3410224 | 73342.0 |
| glycosyl hydrolases family 16 | SAMN04489864_10977 | Not Available | - | 3410271 - 3411128 | 33191.1 |
| beta-galactosidase | SAMN04489864_10978 | Not Available | - | 3411132 - 3414215 | 117241.0 |
| bnr repeat-containing family member | SAMN04489864_10979 | Not Available | - | 3414260 - 3415579 | 49857.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.