Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_10960 | Not Available | - | 3381696 - 3385127 | 127980.0 |
| fecr protein | SAMN04489864_10961 | Not Available | - | 3385315 - 3386463 | 43115.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_10962 | Not Available | - | 3386627 - 3387214 | 22563.8 |
| serine protease do | SAMN04489864_10963 | Not Available | - | 3387291 - 3388949 | 59705.9 |
| hth domain-containing protein | SAMN04489864_10964 | Not Available | + | 3389102 - 3389338 | 9227.25 |
| dihydrofolate reductase | SAMN04489864_10965 | Not Available | + | 3389408 - 3389944 | 20170.2 |
| deor c terminal sensor domain-containing protein | SAMN04489864_10966 | Not Available | - | 3389946 - 3390518 | 20820.9 |
| rhs repeat-associated core domain-containing protein | SAMN04489864_10967 | Not Available | - | 3390643 - 3396315 | 206926.0 |
| hypothetical protein | SAMN04489864_10968 | Not Available | - | 3396322 - 3397149 | 31331.4 |
| hypothetical protein | SAMN04489864_10969 | Not Available | - | 3397160 - 3399115 | 72955.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.