Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| large subunit ribosomal protein l32 | SAMN04489864_108193 | Not Available | - | 3284969 - 3285160 | 7100.52 |
| uncharacterized metal-binding protein yced, duf177 family | SAMN04489864_108194 | Not Available | - | 3285177 - 3285704 | 20092.1 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN04489864_108195 | Not Available | - | 3285779 - 3286858 | 39344.3 |
| 16s rrna (adenine1518-n6/adenine1519-n6)-dimethyltransferase | SAMN04489864_108196 | Not Available | + | 3287018 - 3287803 | 29633.2 |
| d-3-phosphoglycerate dehydrogenase | SAMN04489864_108197 | Not Available | + | 3287817 - 3288746 | 34702.8 |
| organic hydroperoxide reductase osmc/ohra | SAMN04489864_108198 | Not Available | + | 3288779 - 3289255 | 17737.1 |
| transcription elongation factor grea | SAMN04489864_108199 | Not Available | + | 3289400 - 3289873 | 17079.5 |
| histidine triad (hit) family protein | SAMN04489864_108200 | Not Available | + | 3289889 - 3290278 | 14105.4 |
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN04489864_108201 | Not Available | - | 3290279 - 3290605 | 12367.8 |
| d-tyrosyl-trna(tyr) deacylase | SAMN04489864_108202 | Not Available | - | 3290609 - 3291067 | 16823.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.