Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| allosteric nadp-dependent malic enzyme | SAMN04489864_108173 | Not Available | + | 3253213 - 3255555 | 85928.6 |
| holliday junction dna helicase subunit ruva | SAMN04489864_108174 | Not Available | + | 3255561 - 3256145 | 21353.2 |
| cell surface protein spra | SAMN04489864_108175 | Not Available | + | 3256157 - 3263323 | 269837.0 |
| glycine cleavage system h protein | SAMN04489864_108176 | Not Available | + | 3263501 - 3263881 | 13673.0 |
| vanz like family protein | SAMN04489864_108177 | Not Available | + | 3263871 - 3264290 | 16376.4 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN04489864_108178 | Not Available | + | 3264441 - 3267233 | 102724.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_108179 | Not Available | + | 3267350 - 3270202 | 104862.0 |
| ferrous iron transport protein a | SAMN04489864_108180 | Not Available | + | 3270342 - 3270557 | 7854.84 |
| ferrous iron transport protein b | SAMN04489864_108181 | Not Available | + | 3270560 - 3272671 | 78099.3 |
| sprt-like family protein | SAMN04489864_108182 | Not Available | + | 3272834 - 3273481 | 24976.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.