Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna m(2)a-2503 methyltransferase | SAMN04489864_108153 | Not Available | - | 3233304 - 3234350 | 39657.7 |
| yoeb-like toxin of type ii toxin-antitoxin system | SAMN04489864_108154 | Not Available | - | 3234436 - 3234585 | 5651.94 |
| hypothetical protein | SAMN04489864_108155 | Not Available | - | 3234654 - 3234746 | 3484.38 |
| ribosomal large subunit pseudouridine synthase f | SAMN04489864_108156 | Not Available | - | 3234797 - 3235789 | 36557.0 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04489864_108157 | Not Available | - | 3235905 - 3236402 | 18458.3 |
| hth domain-containing protein | SAMN04489864_108158 | Not Available | - | 3236483 - 3237172 | 26865.6 |
| signal transduction histidine kinase | SAMN04489864_108159 | Not Available | + | 3237463 - 3239916 | 92752.2 |
| two-component system, ntrc family, response regulator hydg | SAMN04489864_108160 | Not Available | - | 3239919 - 3241232 | 49004.4 |
| hypothetical protein | SAMN04489864_108161 | Not Available | - | 3241300 - 3241605 | 11028.3 |
| cytosine/adenosine deaminase | SAMN04489864_108162 | Not Available | + | 3241860 - 3243023 | 42660.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.