Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN04489864_108113 | Not Available | - | 3195115 - 3196116 | 35987.4 |
| tonb family c-terminal domain-containing protein | SAMN04489864_108114 | Not Available | - | 3196124 - 3198097 | 74341.9 |
| predicted transcriptional regulator | SAMN04489864_108115 | Not Available | - | 3198094 - 3198471 | 14767.9 |
| metallo-beta-lactamase family protein | SAMN04489864_108116 | Not Available | + | 3198633 - 3200036 | 52172.8 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04489864_108117 | Not Available | - | 3200040 - 3200687 | 24171.1 |
| signal transduction histidine kinase | SAMN04489864_108118 | Not Available | - | 3200691 - 3201482 | 29642.4 |
| hypothetical protein | SAMN04489864_108119 | Not Available | - | 3201449 - 3202039 | 23153.8 |
| hypothetical protein | SAMN04489864_108120 | Not Available | - | 3202129 - 3202653 | 19638.9 |
| peptidase family m28 | SAMN04489864_108121 | Not Available | - | 3202800 - 3204377 | 57614.7 |
| hypothetical protein | SAMN04489864_108122 | Not Available | + | 3204410 - 3204610 | 7852.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.