Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04489864_108103 | Not Available | + | 3181101 - 3181793 | 26426.2 |
| glpgli family protein | SAMN04489864_108104 | Not Available | - | 3181806 - 3182582 | 29280.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_108105 | Not Available | - | 3182591 - 3185380 | 104118.0 |
| helix-turn-helix domain-containing protein | SAMN04489864_108106 | Not Available | + | 3185568 - 3187868 | 87492.7 |
| diaminopimelate epimerase | SAMN04489864_108107 | Not Available | - | 3187926 - 3188705 | 28640.9 |
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN04489864_108108 | Not Available | + | 3188958 - 3190505 | 53987.7 |
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN04489864_108109 | Not Available | + | 3190690 - 3191364 | 25288.4 |
| succinate dehydrogenase subunit a | SAMN04489864_108110 | Not Available | + | 3191397 - 3193376 | 72822.4 |
| succinate dehydrogenase / fumarate reductase iron-sulfur subunit | SAMN04489864_108111 | Not Available | + | 3193387 - 3194157 | 27913.5 |
| tonb family c-terminal domain-containing protein | SAMN04489864_108112 | Not Available | - | 3194283 - 3195089 | 29828.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.