Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompa | SAMN04489864_10883 | Not Available | - | 3160537 - 3161217 | 23264.8 |
| hypothetical protein | SAMN04489864_10884 | Not Available | - | 3161222 - 3161356 | 5181.64 |
| abc-2 type transport system atp-binding protein | SAMN04489864_10885 | Not Available | - | 3161387 - 3162082 | 26303.5 |
| hypothetical protein | SAMN04489864_10886 | Not Available | - | 3162087 - 3163559 | 56092.4 |
| putative atpase | SAMN04489864_10887 | Not Available | - | 3163561 - 3164841 | 47164.6 |
| superfamily ii dna and rna helicase | SAMN04489864_10888 | Not Available | - | 3164880 - 3166091 | 45153.3 |
| protein of unknown function | SAMN04489864_10889 | Not Available | - | 3166497 - 3167231 | 26386.9 |
| ca-activated chloride channel family protein | SAMN04489864_10890 | Not Available | - | 3167268 - 3169142 | 68175.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_10891 | Not Available | + | 3169272 - 3169850 | 22576.1 |
| carboxypepd_reg-like domain-containing protein | SAMN04489864_10892 | Not Available | + | 3169840 - 3171078 | 44467.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.