Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-iminobutanoate/2-iminopropanoate deaminase | SAMN04489864_10833 | Not Available | + | 3107375 - 3107755 | 13601.2 |
| chloramphenicol-sensitive protein rard | SAMN04489864_10834 | Not Available | + | 3107760 - 3108662 | 34307.4 |
| atp-dependent dna helicase recg | SAMN04489864_10835 | Not Available | + | 3108673 - 3110778 | 80148.4 |
| cubico group peptidase, beta-lactamase class c family | SAMN04489864_10836 | Not Available | - | 3110900 - 3112276 | 52906.6 |
| fumarase, class ii | SAMN04489864_10837 | Not Available | + | 3112278 - 3113675 | 49872.0 |
| hypothetical protein | SAMN04489864_10838 | Not Available | + | 3113684 - 3114193 | 18964.8 |
| s1/p1 nuclease | SAMN04489864_10839 | Not Available | + | 3114195 - 3114995 | 30538.9 |
| protein-tyrosine phosphatase | SAMN04489864_10840 | Not Available | + | 3115074 - 3115493 | 16087.0 |
| protein of unknown function | SAMN04489864_10841 | Not Available | + | 3115501 - 3116064 | 21155.6 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04489864_10842 | Not Available | - | 3116067 - 3116504 | 16673.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.