Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor plug domain | SAMN04489864_10813 | Not Available | - | 3084539 - 3086920 | 91382.2 |
| helix-turn-helix domain-containing protein | SAMN04489864_10814 | Not Available | - | 3087002 - 3088072 | 41101.6 |
| acyl-coa dehydrogenase | SAMN04489864_10815 | Not Available | + | 3088186 - 3089331 | 41483.1 |
| putative membrane protein | SAMN04489864_10816 | Not Available | - | 3089410 - 3089757 | 12169.9 |
| hypothetical protein | SAMN04489864_10817 | Not Available | + | 3089775 - 3090209 | 16248.7 |
| ribosome maturation factor rimp | SAMN04489864_10818 | Not Available | + | 3090540 - 3091004 | 17224.0 |
| nusa antitermination factor | SAMN04489864_10819 | Not Available | + | 3091008 - 3092243 | 46707.7 |
| translation initiation factor if-2 | SAMN04489864_10820 | Not Available | + | 3092315 - 3095311 | 107662.0 |
| wxcm-like, c-terminal | SAMN04489864_10821 | Not Available | + | 3095389 - 3095796 | 15471.3 |
| wxcm-like, c-terminal | SAMN04489864_10822 | Not Available | + | 3095796 - 3096209 | 15429.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.