Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,2-mannosidase, putative | SAMN04489864_107191 | Not Available | + | 3061826 - 3064105 | 86070.4 |
| dna topoisomerase-3 | SAMN04489864_107192 | Not Available | + | 3064123 - 3065958 | 68333.1 |
| muramoyltetrapeptide carboxypeptidase | SAMN04489864_107193 | Not Available | + | 3066001 - 3067020 | 37252.2 |
| hypothetical protein | SAMN04489864_107194 | Not Available | + | 3067114 - 3069504 | 89242.5 |
| dna-binding transcriptional regulator, lrp family | SAMN04489864_107195 | Not Available | - | 3069554 - 3070018 | 17597.2 |
| cysteine synthase a | SAMN04489864_107196 | Not Available | + | 3070167 - 3071246 | 39126.4 |
| disulphide bond corrector protein dsbc | SAMN04489864_107197 | Not Available | + | 3071272 - 3071718 | 16701.4 |
| thiol:disulfide interchange protein dsbd | SAMN04489864_107198 | Not Available | + | 3071728 - 3073383 | 60422.9 |
| hypothetical protein | SAMN04489864_1081 | Not Available | - | 3073572 - 3074001 | 16034.5 |
| ribonuclease g | SAMN04489864_1082 | Not Available | - | 3074168 - 3075718 | 58465.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.