Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator receiver domain-containing protein | SAMN04489864_107171 | Not Available | - | 3037666 - 3038028 | 13492.6 |
| multidrug resistance protein, mate family | SAMN04489864_107172 | Not Available | - | 3038093 - 3039469 | 49770.3 |
| putative dna-binding domain-containing protein | SAMN04489864_107173 | Not Available | - | 3039496 - 3040125 | 23712.7 |
| protein of unknown function | SAMN04489864_107174 | Not Available | - | 3040176 - 3040661 | 18747.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN04489864_107175 | Not Available | + | 3040879 - 3043101 | 83295.1 |
| protein of unknown function | SAMN04489864_107176 | Not Available | + | 3043105 - 3043890 | 28819.4 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04489864_107177 | Not Available | - | 3043899 - 3044582 | 26285.3 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04489864_107178 | Not Available | - | 3044579 - 3046012 | 55017.6 |
| hypothetical protein | SAMN04489864_107179 | Not Available | + | 3046168 - 3046794 | 23996.1 |
| sugar phosphate permease | SAMN04489864_107180 | Not Available | + | 3046868 - 3048088 | 43679.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.