Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-type fe3+-hydroxamate transport system, substrate-binding protein | SAMN04489864_107121 | Not Available | - | 2980061 - 2980864 | 30556.1 |
| hypothetical protein | SAMN04489864_107122 | Not Available | - | 2980864 - 2981775 | 34208.0 |
| hypothetical protein | SAMN04489864_107123 | Not Available | + | 2981823 - 2982038 | 8224.43 |
| protein of unknown function | SAMN04489864_107124 | Not Available | - | 2982040 - 2982453 | 15932.5 |
| arac-type dna-binding protein | SAMN04489864_107125 | Not Available | - | 2982443 - 2983321 | 33868.0 |
| dna polymerase-3 subunit epsilon | SAMN04489864_107126 | Not Available | - | 2983429 - 2984805 | 51854.4 |
| undecaprenyl-diphosphatase | SAMN04489864_107127 | Not Available | - | 2984952 - 2985593 | 24708.3 |
| mfs transporter, mhs family, alpha-ketoglutarate permease | SAMN04489864_107128 | Not Available | - | 2985583 - 2986887 | 47947.1 |
| hypothetical protein | SAMN04489864_107129 | Not Available | - | 2986964 - 2988490 | 56758.0 |
| planctomycete cytochrome c | SAMN04489864_107130 | Not Available | + | 2988872 - 2991247 | 90392.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.