Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like metal-binding protein ycie | SAMN04489864_104140 | Not Available | - | 1878915 - 1879460 | 20210.0 |
| hypothetical protein | SAMN04489864_104141 | Not Available | - | 1879482 - 1880369 | 31570.0 |
| Trna-arg | Not Available | Not Available | + | 1880466 - 1880540 | Not Available |
| xaa-pro aminopeptidase | SAMN04489864_104143 | Not Available | - | 1880579 - 1882354 | 66667.9 |
| thioesterase-3 | SAMN04489864_104144 | Not Available | - | 1882434 - 1882853 | 16072.4 |
| hypothetical protein | SAMN04489864_104145 | Not Available | + | 1882987 - 1883271 | 10789.7 |
| abc-type lipopolysaccharide export system, atpase component | SAMN04489864_104146 | Not Available | + | 1883268 - 1883819 | 20333.1 |
| small subunit ribosomal protein s15 | SAMN04489864_104147 | Not Available | + | 1883998 - 1884282 | 10939.5 |
| polyribonucleotide nucleotidyltransferase | SAMN04489864_104148 | Not Available | + | 1884399 - 1886534 | 77274.9 |
| ribulose-phosphate 3-epimerase | SAMN04489864_104149 | Not Available | + | 1886767 - 1887438 | 23936.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.