Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose-h+ transport protein | SAMN04489864_10470 | Not Available | + | 1790349 - 1791440 | 39663.3 |
| rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | SAMN04489864_10471 | Not Available | + | 1791486 - 1793600 | 76367.2 |
| l-rhamnose isomerase / sugar isomerase | SAMN04489864_10472 | Not Available | + | 1793681 - 1794964 | 47332.3 |
| sugar (pentulose or hexulose) kinase | SAMN04489864_10473 | Not Available | + | 1794977 - 1796356 | 51975.9 |
| hypothetical protein | SAMN04489864_10474 | Not Available | - | 1796527 - 1797438 | 34086.7 |
| arginine deiminase | SAMN04489864_10475 | Not Available | - | 1797476 - 1799023 | 58827.8 |
| arginyl-trna synthetase | SAMN04489864_10476 | Not Available | + | 1799064 - 1800833 | 66623.9 |
| hypothetical protein | SAMN04489864_10477 | Not Available | + | 1800846 - 1801616 | 27585.8 |
| hypothetical protein | SAMN04489864_10478 | Not Available | + | 1801813 - 1802913 | 39092.6 |
| putative auto-transporter adhesin, head gin domain | SAMN04489864_10479 | Not Available | + | 1802997 - 1803647 | 23353.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.