Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transposase inso and inactivated derivatives | SAMN04489864_103456 | Not Available | + | 1684248 - 1685138 | 34887.2 |
| rifampin adp-ribosylating transferase | SAMN04489864_1041 | Not Available | - | 1685493 - 1685927 | 16004.8 |
| dna-binding transcriptional regulator, marr family | SAMN04489864_1042 | Not Available | - | 1685930 - 1686385 | 17078.9 |
| thiol-disulfide isomerase or thioredoxin | SAMN04489864_1043 | Not Available | + | 1686573 - 1687730 | 44122.3 |
| tfox n-terminal domain-containing protein | SAMN04489864_1044 | Not Available | + | 1687735 - 1688103 | 14124.3 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04489864_1045 | Not Available | - | 1688114 - 1688614 | 19066.8 |
| protein of unknown function | SAMN04489864_1046 | Not Available | + | 1688859 - 1689224 | 13507.3 |
| dna-binding transcriptional regulator, merr family | SAMN04489864_1047 | Not Available | - | 1689334 - 1690110 | 29669.6 |
| ca2+-transporting atpase | SAMN04489864_1048 | Not Available | + | 1690606 - 1693113 | 92312.7 |
| hypothetical protein | SAMN04489864_1049 | Not Available | - | 1693285 - 1693758 | 18274.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.