Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidase c10 family protein | SAMN04489864_103406 | Not Available | - | 1651569 - 1652285 | 25617.9 |
| spi protease inhibitor | SAMN04489864_103407 | Not Available | - | 1652312 - 1652743 | 16100.7 |
| hypothetical protein | SAMN04489864_103408 | Not Available | + | 1652827 - 1653315 | 18153.3 |
| methyltransferase domain-containing protein | SAMN04489864_103409 | Not Available | - | 1653333 - 1654520 | 44673.0 |
| choline dehydrogenase | SAMN04489864_103410 | Not Available | + | 1654629 - 1656365 | 63644.9 |
| gluconate 2-dehydrogenase subunit 3 | SAMN04489864_103411 | Not Available | + | 1656367 - 1656990 | 22919.5 |
| lsu ribosomal protein l17p | SAMN04489864_103412 | Not Available | - | 1657048 - 1657623 | 21040.0 |
| dna-directed rna polymerase subunit alpha | SAMN04489864_103413 | Not Available | - | 1657701 - 1658693 | 37312.1 |
| small subunit ribosomal protein s4 | SAMN04489864_103414 | Not Available | - | 1658770 - 1659378 | 22983.7 |
| small subunit ribosomal protein s11 | SAMN04489864_103415 | Not Available | - | 1659445 - 1659834 | 13762.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.